Bass frequencies really aren't going to have any stereo separation, so you aren't losing anything by only pulling signal from one side.
Connecting a single channel amp to two subs typically means choosing between wiring in parallel (halving impedance) or series (doubling it). So if you have 4-ohm subs, run them in parallel and make sure the amp is stable down to 2 ohms (if you ran them series, you'd be at 8 ohms and really limit your power). If you have 2-ohm subs, run them in series for a 4-ohm load which most amps can handle (if you ran them in parallel, you'd be at 1 ohms which is very low).
In this example the subs are dual voice coil, so you're effectively wiring 4 speakers to the amp. 2-ohm voice coils in series makes each sub 4 ohms, then subs in parallel brings the overall load back to 2 ohms (I guess you could also run voice coils in parallel, giving you 1-ohm subs, then subs in series to get back to 2 ohms overall).